species:   Clros
pid:       PID1838
parent:    cro-mir-4
paralog:   
locus:     CADEHS020000005.2:590451-590536
matures:   ['UCAGCCUCGAGACUUUGCC', 'CAAAGUCUCGAGGCUAAG']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000005.2:590451-590536

81 out of bounds
1250 alignments
139 proper strand
116 stranded perfect matches

*******************                                              ******************** 
UCAGCCUCGAGACUUUGCCGGAUAGCUUUGUUUUCUUUACGGCGAAAAAGAAAAAGAAUAUAUCCUGCAAAGUCUCGAGGCUAAGC
..((((((((((((((((.(((((..(((.((((((((........)))))))).)))..))))).))))))))))))))))....
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=96 c
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 c*
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=96 ma
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 ma*

-----------------------------------------------------------------UGCAAAGUCUCGAGGCUAAGa l=21 a=6 
-----CUCGAGACUUUGCCGGAUAGa------------------------------------------------------------ l=21 a=1 
-CAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=18 a=4 
UCAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=18 a=10 
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=96 (c,ma)
UuAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=11 
UCAGCCUCGAGACUUUGCa------------------------------------------------------------------- l=19 a=1 
UCAGCCUCGAGACUUUGCCG------------------------------------------------------------------ l=20 a=6 
UCAGCCUCGAGACUUUGuCG------------------------------------------------------------------ l=20 a=2 
UCAGCCUCGAGACUUUGCCGa----------------------------------------------------------------- l=21 a=2 

mb-01111
ax-1011001
ku-11
ss-101011011100
fn-101
